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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_1039382_1041682_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1039382 - 1041682
Intron Length:
2301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGAAGC
5'SS Class:
strong_major
3'SS Sequence:
CGTATTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGTATTTCAACA
Flanking Amino Acid:
LFTMCLVGAIGHGIWAGSFS
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
71.6
38.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
68.3
0.41
1
62.5
38.5
Minor 5ss
39.9
-1.1
2.8
52.3
44.5
Minor BPS
58.2
0.25
1.5
68.8
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012027
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012549
1013179 - 1064319
51141