Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10396381_10396475_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10396381 - 10396475

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGCCCT

5'SS Class:

major

3'SS Sequence:

TTTTTTTTCCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTTTTTTTTCCC

Flanking Amino Acid:

SNDCALCAHNIEFGTSVAKK

Intron Amino Acid Position:

310

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

1.1

68.3

42.6

Major BPS

90.4

0.7

90.2

19.3

Major PPT

93.7

0.98

0.6

88.2

29.1

Minor 5ss

42.9

-0.8

3.1

62.7

41.6

Minor BPS

44.3

-0.4

3.6

73.48

37.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000001082

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001102

10389030 - 10398600

9571

ENSAPLT00000001095

10233849 - 10399450

165602