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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10406532_10412515_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10406532 - 10412515
Intron Length:
5984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCCT
5'SS Class:
strong_major
3'SS Sequence:
GTTCCTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAAAAC
U12 Branch Point Sequence:
GTTCCTTTGACA
Flanking Amino Acid:
ERSTSWRGIKVDCSRFPNTT
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
77.1
37.8
Major BPS
51.9
0.05
1.1
59.4
32.8
Major PPT
75.8
0.58
1
72
38
Minor 5ss
42.9
-0.8
2.8
59.8
44.7
Minor BPS
72.1
0.69
1.2
76.84
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016124
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042016
10405397 - 10415895
10499