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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10412653_10413189_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10412653 - 10413189
Intron Length:
537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGCGTACT
5'SS Class:
major
3'SS Sequence:
TTCCCATCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TTTTTCCCATCT
Flanking Amino Acid:
SNECLLCAYNIEYGTNISKD
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
73.7
36.7
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
79.6
0.67
0.8
73.6
30.2
Minor 5ss
34.3
-1.8
3.1
47.6
41.1
Minor BPS
50.7
0.1
2.1
80.75
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016124
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042016
10405397 - 10415895
10499
ENSAPLT00000037075
10405397 - 10415895
10499
ENSAPLT00000016826
10410501 - 10415895
5395