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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10413676_10414031_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10413676 - 10414031
Intron Length:
356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAACAT
U12 Branch Point Sequence:
AGTTCCCTAACA
Flanking Amino Acid:
DNECMLCAHNVEQGTSVGKK
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
73.5
37
Major BPS
58.7
0.22
1.2
67
38
Major PPT
86.8
0.83
0.6
81.3
30.7
Minor 5ss
34.9
-1.7
2.8
44.7
42.7
Minor BPS
71.3
0.67
1.6
79.96
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016124
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042016
10405397 - 10415895
10499
ENSAPLT00000037075
10405397 - 10415895
10499
ENSAPLT00000016826
10410501 - 10415895
5395