About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10414093_10415108_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10414093 - 10415108
Intron Length:
1016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
TCTTGTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTGCATTAAGG
Flanking Amino Acid:
DGKCKKEVATVDCSGYPKPA
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
70.3
40.5
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
85.8
0.81
0.8
80.7
31.4
Minor 5ss
38.5
-1.3
3.3
54.8
43.4
Minor BPS
55.9
0.05
2.1
68.33
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016124
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042016
10405397 - 10415895
10499
ENSAPLT00000037075
10405397 - 10415895
10499
ENSAPLT00000016826
10410501 - 10415895
5395