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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10425405_10425984_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10425405 - 10425984
Intron Length:
580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCACAT
U12 Branch Point Sequence:
TCCTTTTTAACA
Flanking Amino Acid:
FSDIVSGQRWASCSVYRMAD
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.8
38.7
Major BPS
62.5
0.31
1.2
69
38.9
Major PPT
82.8
0.74
0.8
80
30.6
Minor 5ss
31.6
-2.1
2.7
34.1
41.4
Minor BPS
73.2
0.72
1.2
73.92
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016711
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046332
10424809 - 10429115
4307