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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10427476_10427586_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10427476 - 10427586
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
CTTCTTCCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCATGCTCAATA
Flanking Amino Acid:
SNKCSFCTAVANGEDIDLLM
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.3
65.8
40.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
69.9
0.45
1
70.8
27.7
Minor 5ss
30.8
-2.2
3.2
37.1
40.4
Minor BPS
52
0.06
2
64.2
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016711
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046332
10424809 - 10429115
4307