About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10427633_10428325_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10427633 - 10428325
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCCG
5'SS Class:
major
3'SS Sequence:
CAATGTGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
AGCTTCACAATG
Flanking Amino Acid:
DLLMPGKCPKFRNTQIDCSG
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
60.3
44.2
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
68.9
0.43
1
61.4
44
Minor 5ss
30.4
-2.2
3.3
39.3
46.1
Minor BPS
44.9
-0.5
1.8
47.33
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016711
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046332
10424809 - 10429115
4307