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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10434452_10435276_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10434452 - 10435276
Intron Length:
825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
ATTCCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTGTTATTATTC
Flanking Amino Acid:
SDVAAQDIEEICKEFVNRSV
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.1
76.2
32.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
86.2
0.81
0.7
80.9
30.3
Minor 5ss
29.3
-2.4
2.9
33.7
41.5
Minor BPS
52.6
0.06
1.8
66.69
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023164
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020644
10431883 - 10436356
4474