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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10435390_10436173_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10435390 - 10436173
Intron Length:
784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
GCTCCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCATAT
U12 Branch Point Sequence:
TTTCTCTGAGTC
Flanking Amino Acid:
GNKCAFCKAVLRSGGKIRLK
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71
34.7
Major BPS
56.4
0.16
1.3
55
42.7
Major PPT
81.8
0.72
0.8
75.3
33.1
Minor 5ss
34.9
-1.7
3.3
49.9
46.4
Minor BPS
53.7
0.1
1.7
68.51
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023164
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020644
10431883 - 10436356
4474