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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10446275_10452314_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10446275 - 10452314
Intron Length:
6040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CCCTCCATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGACAT
U12 Branch Point Sequence:
CTCCCCTCCATT
Flanking Amino Acid:
FLELNHKHWESFPGRFGLLC
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
49.9
-0
1.4
60.7
45.9
Major PPT
76.7
0.6
0.8
73.1
30.2
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
47.6
-0.1
2
65.16
45.7

Associated Gene:

Gene:
UBLCP1
Ensembl Gene ID:
ENSAPLG00000015997
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016705
10445819 - 10460325
14507