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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10450994_10452314_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10450994 - 10452314
Intron Length:
1321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAA
U12 Branch Point Sequence:
TTTCTGTGAAAC
Flanking Amino Acid:
FLELNHKHWERYLSKKQGQ*
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
59.7
0.24
1.2
52.7
43.2
Major PPT
90.3
0.91
0.7
88.9
28.1
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
47.1
-0.2
2.2
65.83
39.3

Associated Gene:

Gene:
UBLCP1
Ensembl Gene ID:
ENSAPLG00000015997
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023084
10449955 - 10460325
10371