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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10452443_10453781_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10452443 - 10453781
Intron Length:
1339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCGTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
FLMNPQNGLKIRPFMKAHLN
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
86
25
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77
0.61
0.9
73.3
37
Minor 5ss
43.8
-0.7
2.8
58.6
45.8
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
UBLCP1
Ensembl Gene ID:
ENSAPLG00000015997
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023084
10449955 - 10460325
10371
ENSAPLT00000016705
10445819 - 10460325
14507