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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10459726_10460131_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10459726 - 10460131
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAACTATT
5'SS Class:
major
3'SS Sequence:
GTTTACATTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTCTACCCAATT
Flanking Amino Acid:
RQKLLGLKMKGKPADDDVKL
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.2
81.8
38.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
73.6
0.53
0.9
66.7
39.1
Minor 5ss
46.8
-0.3
2.7
60.7
43.8
Minor BPS
49.2
0.02
2
74.11
42.7

Associated Gene:

Gene:
UBLCP1
Ensembl Gene ID:
ENSAPLG00000015997
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023084
10449955 - 10460325
10371
ENSAPLT00000016705
10445819 - 10460325
14507