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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10486347_10491993_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10486347 - 10491993
Intron Length:
5647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
AGGATCTTAATA
Flanking Amino Acid:
LLLYAGHQISRDYVRSELES
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.8
33.7
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
89
0.88
0.7
89.1
27.6
Minor 5ss
35.7
-1.6
3.3
48.3
47.4
Minor BPS
61.7
0.36
1.3
62.85
37.5

Associated Gene:

Gene:
RNF145
Ensembl Gene ID:
ENSAPLG00000015567
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018803
10476206 - 10512686
36481
ENSAPLT00000016251
10476206 - 10512686
36481