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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10505239_10508692_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10505239 - 10508692
Intron Length:
3454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GTGTTGTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TCTGACTTAAAA
Flanking Amino Acid:
RAFMNDPAMNRSLWKHFRAV
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
79.2
0.66
1
72.9
42.2
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
59.2
0.29
1.8
69.52
42.5

Associated Gene:

Gene:
RNF145
Ensembl Gene ID:
ENSAPLG00000015567
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018803
10476206 - 10512686
36481