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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10506844_10508692_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10506844 - 10508692
Intron Length:
1849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
GTGTTGTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TCTGACTTAAAA
Flanking Amino Acid:
IVLALGASRDKSLWKHFRAV
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
72.3
31
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
79.2
0.66
1
72.9
42.2
Minor 5ss
32.4
-2
3.4
41.9
39.1
Minor BPS
59.2
0.29
1.8
69.52
42.5

Associated Gene:

Gene:
RNF145
Ensembl Gene ID:
ENSAPLG00000015567
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016251
10476206 - 10512686
36481