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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_1060178_1064951_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1060178 - 1064951
Intron Length:
4774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTTAGGGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TAATATTAAAGT
Flanking Amino Acid:
INSSKTKVYDKCSYLDLVFG
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
47.3
-0.1
1.8
54.5
45
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
47.2
-0.1
2.1
66.7
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026525
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045407
1060015 - 1066338
6324