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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_1065147_1066063_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1065147 - 1066063
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
GGTATCTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ACCACTTTAATT
Flanking Amino Acid:
LPKNLFEQFHRLANLYFIFL
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
77.7
0.62
0.9
73.5
41.7
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
64.3
0.53
1.3
70.38
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026525
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045407
1060015 - 1066338
6324