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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10699366_10707280_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10699366 - 10707280
Intron Length:
7915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTGG
5'SS Class:
major
3'SS Sequence:
CTTGTGCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGTAT
U12 Branch Point Sequence:
TGTTCCTCCATT
Flanking Amino Acid:
GNPRDMRRFQVVVSTTVNVD
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1.3
69.7
43.7
Major BPS
63.7
0.34
1.4
63.7
43.9
Major PPT
79.7
0.67
0.9
73
37.4
Minor 5ss
35
-1.7
2.7
41.5
44.9
Minor BPS
59.8
0.39
2
81.06
40.8

Associated Gene:

Gene:
EBF1
Ensembl Gene ID:
ENSAPLG00000015476
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016130
10699282 - 10793829
94548