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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10707423_10728923_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
10707423 - 10728923
Intron Length:
21501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGCATA
5'SS Class:
major
3'SS Sequence:
TGTTGAAAAGCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTTTTCATGT
Flanking Amino Acid:
SEGTPSYLEHATPCIKAISP
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
70.7
41.3
Major BPS
100
1.24
0.5
100
0
Major PPT
59.4
0.21
1.1
53.8
44.1
Minor 5ss
41.7
-0.9
3.2
53.5
45.8
Minor BPS
46.5
-0.1
2
66.8
44.7

Associated Gene:

Gene:
EBF1
Ensembl Gene ID:
ENSAPLG00000015476
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016130
10699282 - 10793829
94548