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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10729055_10736858_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10729055 - 10736858
Intron Length:
7804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CCCTTCTCAATG
Flanking Amino Acid:
IFGTMLVWSELITPHAIRVQ
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
85.2
32.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
81.8
0.72
0.8
74.6
36.4
Minor 5ss
37.2
-1.4
3.6
57.3
47.4
Minor BPS
49.9
-0.1
1.7
50.15
44.9

Associated Gene:

Gene:
EBF1
Ensembl Gene ID:
ENSAPLG00000015476
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016130
10699282 - 10793829
94548