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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10788224_10788826_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10788224 - 10788826
Intron Length:
603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TCTTTTTTACAT
Flanking Amino Acid:
ALYGMPHNNQEIILKRAADI
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
77.4
30.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
73.7
0.53
0.8
66.2
35.9
Minor 5ss
32.3
-2
3.2
41.6
45
Minor BPS
58.5
0.35
1.7
75.95
41.3

Associated Gene:

Gene:
EBF1
Ensembl Gene ID:
ENSAPLG00000015476
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016130
10699282 - 10793829
94548