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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10789005_10790500_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
10789005 - 10790500
Intron Length:
1496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTCAGGAGA
5'SS Class:
major
3'SS Sequence:
CTCCCTACAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AATTTCTAAATG
Flanking Amino Acid:
VSEASQATNQGFTRNSSSVS
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.4
60.5
45.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
56
0.14
1
57
30.9
Minor 5ss
26.6
-2.7
2.8
23.2
36.9
Minor BPS
58.4
0.13
1.7
62.27
40.1

Associated Gene:

Gene:
EBF1
Ensembl Gene ID:
ENSAPLG00000015476
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016130
10699282 - 10793829
94548