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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_108291_108727_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108291 - 108727
Intron Length:
437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGTATG
5'SS Class:
strong_major
3'SS Sequence:
ACTGTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
GCTACACTAACT
Flanking Amino Acid:
RVTGISLHSSEGRALYQVHY
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
78
38.3
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
80.8
0.69
0.9
77.2
36.4
Minor 5ss
32.8
-2
3
41.6
45
Minor BPS
50.2
0.08
2
71.98
44

Associated Gene:

Gene:
PCYOX1L
Ensembl Gene ID:
ENSAPLG00000011797
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012271
107092 - 109386
2295