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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10891120_10894826_R

Intron Information:

Intron Rank:
146998
Intron Class:
major
Intron Phase:
Intron Coordinates:
10891120 - 10894826
Intron Length:
3707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTCA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTGTTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
CCATCATTGATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71
35.1
Major BPS
76.2
0.65
1
67
39.8
Major PPT
75
0.56
1
68.8
41.9
Minor 5ss
43.1
-0.8
3
56.5
47.9
Minor BPS
49.7
-0.1
1.7
51.89
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026387
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044402
10890938 - 10895162
4225