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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10907715_10920015_R

Intron Information:

Intron Rank:
138054
Intron Class:
major
Intron Phase:
Intron Coordinates:
10907715 - 10920015
Intron Length:
12301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTGCC
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTAATAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
66.7
40.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
88.3
0.86
0.6
84.3
23.8
Minor 5ss
33
-1.9
3.3
45.2
42.7
Minor BPS
54.4
0.22
2.1
79.78
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021800
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048162
10907550 - 10922607
15058