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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_10920121_10925947_R

Intron Information:

Intron Rank:
138053
Intron Class:
major
Intron Phase:
Intron Coordinates:
10920121 - 10925947
Intron Length:
5827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCATTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTTCTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
83.3
0.75
0.7
82.1
28.2
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
73.4
0.82
1.7
91.07
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021800
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021967
10919107 - 10925994
6888