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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_110418_110635_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
110418 - 110635
Intron Length:
218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
CTCCTCTTGATT
Flanking Amino Acid:
NQRSLSPWAYSINHDATRIP
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
87.9
0.85
0.7
80.8
31.3
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
61.7
0.45
1.3
71.44
40.3

Associated Gene:

Gene:
IL17B
Ensembl Gene ID:
ENSAPLG00000011795
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012266
110159 - 113423
3265