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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11114025_11127498_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11114025 - 11127498
Intron Length:
13474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGTGTGTTAATT
Flanking Amino Acid:
VLRAQLGFLECTNVVMNYSE
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
0.9
74.3
34.1
Major BPS
84.4
0.85
1
84
34.5
Major PPT
89.2
0.88
0.6
84.3
23.5
Minor 5ss
33.2
-1.9
3.4
45.7
43.4
Minor BPS
54.5
0.22
2.1
75.64
41.8

Associated Gene:

Gene:
CLINT1
Ensembl Gene ID:
ENSAPLG00000013481
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022606
11113969 - 11149797
35829