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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11127604_11128243_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11127604 - 11128243
Intron Length:
640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTAATTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTGTTTAATT
Flanking Amino Acid:
PSGQLMGEIAKATFMYEQFP
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
26.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
81.5
0.71
0.8
77.5
36.4
Minor 5ss
36.1
-1.6
3.3
49.4
41.3
Minor BPS
74.8
0.86
1.7
91.31
32.6

Associated Gene:

Gene:
CLINT1
Ensembl Gene ID:
ENSAPLG00000013481
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028391
11102903 - 11149797
46895
ENSAPLT00000022606
11113969 - 11149797
35829
ENSAPLT00000014098
11102903 - 11150220
47318
ENSAPLT00000044696
11102903 - 11149797
46895