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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11129913_11130805_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11129913 - 11130805
Intron Length:
893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTATCTATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TACTCTTTATCC
Flanking Amino Acid:
LRSLENYHFVDENGKDQGIN
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
83.1
30.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
76.4
0.59
1
70
39.9
Minor 5ss
35.6
-1.6
3
47.8
47.9
Minor BPS
65.2
0.46
1.6
71.12
40.5

Associated Gene:

Gene:
CLINT1
Ensembl Gene ID:
ENSAPLG00000013481
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028391
11102903 - 11149797
46895
ENSAPLT00000022606
11113969 - 11149797
35829
ENSAPLT00000014098
11102903 - 11150220
47318
ENSAPLT00000044696
11102903 - 11149797
46895