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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11130971_11134498_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11130971 - 11134498
Intron Length:
3528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
ATGCCTTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATC
Flanking Amino Acid:
SSDSVGGFRYSERYDPEPKS
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
74.6
35.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
67.4
0.39
1
61.5
38.6
Minor 5ss
35.1
-1.7
2.8
49.5
40.3
Minor BPS
81.7
0.97
0.9
85.33
26

Associated Gene:

Gene:
CLINT1
Ensembl Gene ID:
ENSAPLG00000013481
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044696
11102903 - 11149797
46895
ENSAPLT00000028391
11102903 - 11149797
46895
ENSAPLT00000022606
11113969 - 11149797
35829
ENSAPLT00000014098
11102903 - 11150220
47318