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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11134674_11138266_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11134674 - 11138266
Intron Length:
3593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTAGAG
5'SS Class:
major
3'SS Sequence:
TGTATTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTTATCACT
Flanking Amino Acid:
KDREDSPERCSDSDEEKSRR
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
59
40.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81
0.7
0.9
73.6
41.7
Minor 5ss
28.8
-2.4
3.4
38.2
46.7
Minor BPS
51.9
0.14
2
77.35
39.2

Associated Gene:

Gene:
CLINT1
Ensembl Gene ID:
ENSAPLG00000013481
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028391
11102903 - 11149797
46895
ENSAPLT00000022606
11113969 - 11149797
35829
ENSAPLT00000014098
11102903 - 11150220
47318
ENSAPLT00000044696
11102903 - 11149797
46895