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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11138502_11139478_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11138502 - 11139478
Intron Length:
977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
AAAAGATTAACT
Flanking Amino Acid:
ASHTAQPTAKASVPSGSKSS
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.8
33
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
86.8
0.83
0.7
81.7
29.5
Minor 5ss
31.9
-2.1
3
38.8
46.3
Minor BPS
48.6
-0
2
67.09
42.6

Associated Gene:

Gene:
CLINT1
Ensembl Gene ID:
ENSAPLG00000013481
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028391
11102903 - 11149797
46895
ENSAPLT00000022606
11113969 - 11149797
35829
ENSAPLT00000014098
11102903 - 11150220
47318
ENSAPLT00000044696
11102903 - 11149797
46895