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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11148113_11148750_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11148113 - 11148750
Intron Length:
638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CCTCCTTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
TGTATCCCAACA
Flanking Amino Acid:
GIGLPMSRSQPLQSVNTLMP
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.8
42.3
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
79.8
0.67
0.7
72.4
32.3
Minor 5ss
45.8
-0.4
2.6
60.7
44
Minor BPS
49.1
-0
1.9
66.08
39.7

Associated Gene:

Gene:
CLINT1
Ensembl Gene ID:
ENSAPLG00000013481
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028391
11102903 - 11149797
46895
ENSAPLT00000022606
11113969 - 11149797
35829
ENSAPLT00000014098
11102903 - 11150220
47318
ENSAPLT00000044696
11102903 - 11149797
46895