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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11148956_11149435_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11148956 - 11149435
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TCTGATTTACTA
Flanking Amino Acid:
PSLNTMMQQQNMQQPMNVMT
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
82.9
23.9
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
88.4
0.86
0.7
83.7
24.3
Minor 5ss
38.1
-1.3
3
49.4
41.3
Minor BPS
47.7
-0.1
1.8
59.11
41.8

Associated Gene:

Gene:
CLINT1
Ensembl Gene ID:
ENSAPLG00000013481
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044696
11102903 - 11149797
46895
ENSAPLT00000028391
11102903 - 11149797
46895
ENSAPLT00000022606
11113969 - 11149797
35829
ENSAPLT00000014098
11102903 - 11150220
47318