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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11170969_11172567_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11170969 - 11172567
Intron Length:
1599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
TGTTCCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TGTTCCTTTACA
Flanking Amino Acid:
YAEPQLTLTRLFDRLKLQES
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
72.3
39.5
Major BPS
75.5
0.63
1
66
40.9
Major PPT
86.3
0.82
0.8
80.2
31.9
Minor 5ss
34.2
-1.8
3
36.5
40.9
Minor BPS
77.7
0.87
1.5
84.68
34.6

Associated Gene:

Gene:
LSM11
Ensembl Gene ID:
ENSAPLG00000026202
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047962
11167418 - 11176118
8701