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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11172652_11173372_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11172652 - 11173372
Intron Length:
721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATGACT
5'SS Class:
major
3'SS Sequence:
TTTAATCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTCTTTAATC
Flanking Amino Acid:
LVAFDKFWNMALTDVDETYR
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
70.7
39
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.8
0.65
0.9
70.5
40.7
Minor 5ss
35.1
-1.7
3.2
47.1
42.5
Minor BPS
83
1.02
0.9
84.51
27.3

Associated Gene:

Gene:
LSM11
Ensembl Gene ID:
ENSAPLG00000026202
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047962
11167418 - 11176118
8701