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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11173513_11175676_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11173513 - 11175676
Intron Length:
2164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGGGCT
5'SS Class:
major
3'SS Sequence:
CTTTCTGTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
TTTTGTTGAAGA
Flanking Amino Acid:
APRNVLTRMPLHEGSPLGEL
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.2
0.33
1.4
61.7
43
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
82.1
0.72
0.8
80.8
31.3
Minor 5ss
33.7
-1.9
3.7
52.4
44.6
Minor BPS
51.1
0.03
2.1
71.68
40.8

Associated Gene:

Gene:
LSM11
Ensembl Gene ID:
ENSAPLG00000026202
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047962
11167418 - 11176118
8701