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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11180398_11180856_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11180398 - 11180856
Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGCT
5'SS Class:
major
3'SS Sequence:
TTATCTTTGCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TTTGCTTTATCT
Flanking Amino Acid:
RKSKWFKRRASKFMTHVVSQ
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
72.5
37.3
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
66.8
0.38
1.2
67.9
42.4
Minor 5ss
38.6
-1.3
3.4
57.4
46.8
Minor BPS
69.7
0.7
1.7
87.39
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013772
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014359
11177976 - 11181561
3586