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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11181034_11181379_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11181034 - 11181379
Intron Length:
346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGGGC
5'SS Class:
major
3'SS Sequence:
TTTTGCTTCGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTGCTTCGAAG
Flanking Amino Acid:
VVRLDGRNFHRFAEQHEFKK
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
61.4
37.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
73.9
0.54
1
75.3
33.4
Minor 5ss
22.7
-3.1
3.5
31.5
43.1
Minor BPS
48.3
-0.2
1.9
59.59
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013772
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014359
11177976 - 11181561
3586