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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11182353_11183554_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11182353 - 11183554
Intron Length:
1202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTGCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CTTTCCTCATTT
Flanking Amino Acid:
VPLTVLPSDSGMPDTPFSKD
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
66.1
45.1
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
75.7
0.58
0.9
72.4
37.8
Minor 5ss
37.8
-1.4
3.1
48.3
47.5
Minor BPS
61.1
0.43
1.8
79.99
42.5

Associated Gene:

Gene:
SOX30
Ensembl Gene ID:
ENSAPLG00000013850
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014421
11181248 - 11188710
7463