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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11185381_11186686_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11185381 - 11186686
Intron Length:
1306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
TTCCTTTTGAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAA
U12 Branch Point Sequence:
TGATAAATAACT
Flanking Amino Acid:
TVQNSIGHPVCEALSAIRLP
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
77.3
33.6
Major BPS
63.5
0.33
1.2
64.3
39.6
Major PPT
69.9
0.45
1.1
73.7
34.7
Minor 5ss
43.6
-0.7
3.1
68.1
42.7
Minor BPS
49.3
0.03
2
73.77
41.7

Associated Gene:

Gene:
SOX30
Ensembl Gene ID:
ENSAPLG00000013850
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014421
11181248 - 11188710
7463