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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11187180_11188334_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11187180 - 11188334
Intron Length:
1155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCAA
5'SS Class:
major
3'SS Sequence:
TCTTTCATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CATTTCTGAACA
Flanking Amino Acid:
FVPGPYYFPSSTCPFSRPPF
Intron Amino Acid Position:
673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.7
39
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
86.7
0.83
0.7
81.6
28.7
Minor 5ss
30.1
-2.3
3.2
38.5
46.5
Minor BPS
67.8
0.55
1.4
73.13
38.5

Associated Gene:

Gene:
SOX30
Ensembl Gene ID:
ENSAPLG00000013850
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014421
11181248 - 11188710
7463