About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11195475_11197832_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11195475 - 11197832
Intron Length:
2358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGCACGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
TTCTGAGTAACA
Flanking Amino Acid:
EALGSPGGEKHPFRAEVTIE
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
72.2
39.5
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
74.6
0.55
0.9
69.7
35.7
Minor 5ss
27.6
-2.6
3.4
40.1
46
Minor BPS
46.5
-0.2
2.5
68.02
44.4

Associated Gene:

Gene:
ADAM19
Ensembl Gene ID:
ENSAPLG00000013888
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041238
11195085 - 11225608
30524
ENSAPLT00000018355
11195265 - 11225608
30344
ENSAPLT00000014535
11195085 - 11224760
29676