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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11206915_11207804_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11206915 - 11207804
Intron Length:
890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAA
U12 Branch Point Sequence:
CTGAAGTAAATT
Flanking Amino Acid:
QAQTVPLSHTEHCFYHGTVR
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
71.5
33.9
Major BPS
58.6
0.22
1.1
59.7
34.6
Major PPT
79.4
0.66
0.8
72.7
32.1
Minor 5ss
28
-2.5
3
33.3
41.7
Minor BPS
40.5
-0.6
2.3
56.85
46.1

Associated Gene:

Gene:
ADAM19
Ensembl Gene ID:
ENSAPLG00000013888
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041238
11195085 - 11225608
30524
ENSAPLT00000018355
11195265 - 11225608
30344
ENSAPLT00000014535
11195085 - 11224760
29676