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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11207882_11209951_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11207882 - 11209951
Intron Length:
2070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTACG
5'SS Class:
strong_major
3'SS Sequence:
CCTGCTCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAC
U12 Branch Point Sequence:
CCTGCTCCAACA
Flanking Amino Acid:
SVALSACRGLRGLIVLSSNS
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
75.7
40.1
Major BPS
66.7
0.42
1.2
67.6
36.5
Major PPT
67.8
0.4
0.9
61.9
33.5
Minor 5ss
36.5
-1.5
2.7
44.8
42.5
Minor BPS
45.5
-0.3
1.9
55.53
43.9

Associated Gene:

Gene:
ADAM19
Ensembl Gene ID:
ENSAPLG00000013888
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041238
11195085 - 11225608
30524
ENSAPLT00000018355
11195265 - 11225608
30344
ENSAPLT00000014535
11195085 - 11224760
29676