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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_11213120_11214223_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11213120 - 11214223
Intron Length:
1104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAGGTGTA
5'SS Class:
major
3'SS Sequence:
GGGTTGATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTGGGTTGATT
Flanking Amino Acid:
YRKYDNVQLVTGVSFQGTTV
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.3
72.4
39.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
63.7
0.31
1
59.3
46
Minor 5ss
36.3
-1.6
3.5
47.3
42.4
Minor BPS
44.5
-0.3
2.5
65.9
45.8

Associated Gene:

Gene:
ADAM19
Ensembl Gene ID:
ENSAPLG00000013888
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041238
11195085 - 11225608
30524
ENSAPLT00000018355
11195265 - 11225608
30344
ENSAPLT00000014535
11195085 - 11224760
29676